LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Filters

Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-28-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
84913-84939
0.014
0
8mer
134985-135009
0.009
1
7mer
32501-32525
0.008
2
8mer
266024-266042
0.005
0
7mer
223447-223461
0.004
1
7mer
245244-245265
0.004
0
7mer
112359-112378
0.004
1
8mer
213711-213734
0.004
1
8mer
247738-247752
0.004
0
8mer
126591-126618
0.004
1
7mer
99945-99968
0.003
7
7mer
31977-32003
0.003
0
6mer
128940-128966
0.003
9
7mer
229072-229087
0.003
3
6mer
74054-74075
0.003
3
6mer
110906-110920
0.003
2
7mer
252928-252945
0.003
2
6mer
262970-262978
0.003
3
7mer
201241-201263
0.003
Not Conserved
7mer
83298-83321
0.002
1
6mer
114622-114637
0.002
8
8mer
170513-170526
0.002
0
6mer
38895-38914
0.002
3
6mer
59796-59818
0.002
6
6mer
128570-128587
0.002
6
6mer
98141-98165
0.002
2
6mer
10162-10188
0.002
4
7mer
241369-241384
0.002
0
6mer
135902-135921
0.002
3
6mer
123532-123555
0.002
4
7mer
6241-6263
0.002
1
7mer
194979-195004
0.002
2
7mer
74546-74572
0.002
4
6mer
58531-58554
0.002
1
6mer
61428-61454
0.002
1
6mer
49289-49312
0.002
4
6mer
157882-157900
0.002
0
6mer
95819-95844
0.002
5
8mer
63780-63799
0.002
1
6mer
74992-75009
0.002
6
6mer
196312-196333
0.002
2
7mer
33452-33473
0.002
3
6mer
96872-96891
0.002
2
6mer
8203-8223
0.002
1
6mer
2996-3016
0.002
2
6mer
54089-54108
0.002
0
6mer
63087-63110
0.002
1
6mer
136282-136309
0.002
0
7mer
231785-231808
0.002
0
6mer
54260-54286
0.002
2
6mer
67237-67258
0.002
3
6mer
28181-28196
0.002
2
6mer
80027-80052
0.002
0
6mer
72496-72516
0.002
3
6mer
21764-21782
0.002
3
7mer
160040-160061
0.002
0
6mer
91255-91280
0.002
1
6mer
224009-224031
0.002
2
6mer
230402-230417
0.002
0
7mer
260797-260802
0.002
1
6mer
265020-265035
0.002
2
6mer
132861-132888
0.002
2
6mer
129928-129947
0.002
1
6mer
145136-145155
0.002
0
6mer
205602-205621
0.002
2
6mer
12966-12986
0.002
3
6mer
37310-37331
0.002
1
8mer+wobble
207305-207327
0.002
1
6mer
18799-18814
0.002
1
7mer
222396-222414
0.002
1
6mer
20460-20481
0.002
1
6mer
265591-265613
0.002
1
6mer
134251-134272
0.002
3
6mer
199435-199459
0.002
4
6mer
217423-217444
0.002
1
6mer
2525-2545
0.002
1
6mer
74377-74403
0.002
3
6mer
133249-133273
0.002
1
6mer
215023-215038
0.002
1
7mer
266136-266160
0.002
1
7mer
166936-166957
0.002
1
6mer
102766-102786
0.002
1
6mer
200646-200662
0.002
0
6mer
149000-149024
0.002
Not Conserved
6mer
263892-263911
0.002
1
6mer
77441-77466
0.002
Not Conserved
6mer
30557-30576
0.002
2
6mer
103561-103584
0.001
1
7mer
207606-207627
0.001
1
6mer
29103-29130
0.001
1
6mer
96385-96401
0.001
1
6mer
154699-154723
0.001
2
6mer
63692-63705
0.001
1
6mer
14765-14783
0.001
0
6mer
28512-28535
0.001
3
6mer
200934-200950
0.001
Not Conserved
6mer
132069-132078
0.001
1
8mer
122823-122843
0.001
0
6mer
254717-254740
0.001
1
6mer
49143-49168
0.001
1
6mer
65962-65985
0.001
0
6mer
3930-3953
0.001
2
6mer
82849-82863
0.001
1
6mer
166300-166322
0.001
1
7mer
64265-64291
0.001
0
6mer
78854-78869
0.001
1
6mer
177694-177710
0.001
1
6mer
63932-63954
0.001
Not Conserved
6mer
245389-245409
0.001
0
6mer
209916-209937
0.001
3
7mer
57100-57116
0.001
1
6mer
236177-236195
0.001
Not Conserved
8mer
213731-213747
0.001
1
6mer
264050-264070
0.001
2
6mer
109169-109183
0.001
1
6mer
258928-258944
0.001
0
7mer
204665-204690
0.001
0
6mer
254125-254149
0.001
1
7mer
122797-122820
0.001
0
9mer
45405-45428
0.001
Not Conserved
6mer
25078-25093
0.001
1
9mer
59432-59450
0.001
0
7mer
58577-58598
0.001
Not Conserved
6mer
81135-81153
0.001
2
8mer+mismatch
211615-211637
0.001
1
6mer
183483-183507
0.001
2
6mer
30921-30940
0.001
0
6mer
105614-105630
0.001
0
8mer+mismatch
255140-255157
0.001
0
6mer
5932-5958
0.001
2
6mer
229472-229489
0.001
0
6mer
233038-233064
0.001
0
6mer
104975-104999
0.001
1
6mer
53197-53221
0.001
2
6mer
93421-93436
0.001
0
6mer
118654-118673
0.001
1
6mer
116145-116167
0.001
Not Conserved
6mer
228989-229016
0.001
0
6mer
200112-200129
0.001
0
7mer
105716-105733
0.001
1
6mer
5843-5858
0.001
0
6mer
120519-120543
0.001
1
6mer
134564-134587
0.001
0
6mer
100839-100852
0.001
0
6mer
257903-257928
0.001
Not Conserved
6mer
114633-114656
0.001
6
6mer
207802-207828
0.001
0
6mer
258940-258960
0.001
1
6mer
143250-143268
0.001
0
6mer
125369-125389
0.001
0
6mer
170571-170593
0.001
Not Conserved
6mer
214851-214869
0.001
0
6mer
122832-122857
0.001
1
6mer
6309-6334
0.000
0
XLOC_007118
hsa-miR-28-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015037
Biotype: transcript isomorph
Gene id: XLOC_007118
Gene Name: XLOC_007118
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-205
0.032
0
7mer
3961-3985
0.029
1
8mer
528-553
0.013
0
7mer
21-36
0.012
0
7mer
330-354
0.012
0
8mer
627-649
0.011
0
7mer
3911-3935
0.009
0
7mer
971-992
0.007
0
7mer
821-845
0.007
0
7mer
3655-3679
0.007
0
6mer
4224-4248
0.007
0
7mer
921-945
0.006
0
7mer
1164-1188
0.006
0
7mer
3608-3629
0.006
0
7mer
724-748
0.006
0
7mer
774-795
0.006
0
7mer
674-698
0.005
0
7mer
3512-3533
0.005
0
7mer
871-895
0.005
0
6mer
130-149
0.005
0
7mer
3152-3167
0.005
0
7mer
1313-1334
0.005
0
7mer
3415-3439
0.005
0
6mer
479-503
0.004
0
7mer
1067-1091
0.004
0
7mer
3558-3582
0.004
0
6mer
3757-3776
0.004
0
7mer
1407-1429
0.004
0
7mer
1744-1768
0.003
0
7mer
2588-2612
0.003
0
7mer
1556-1577
0.003
0
7mer
2738-2759
0.003
0
7mer
1950-1974
0.003
0
7mer
2688-2711
0.003
0
7mer
3103-3126
0.003
0
7mer
1697-1718
0.002
0
7mer
2879-2900
0.002
0
7mer
2832-2853
0.002
0
7mer
1603-1624
0.002
0
6mer
3809-3832
0.002
Not Conserved
6mer
3313-3328
0.002
0
7mer
2785-2806
0.002
0
7mer
1894-1918
0.002
0
6mer
2998-3017
0.002
0
7mer
1506-1530
0.002
0
7mer
1117-1138
0.002
Not Conserved
7mer
2537-2561
0.001
0
7mer
2056-2080
0.001
Not Conserved
6mer
1457-1483
0.001
0
7mer
2006-2030
0.001
Not Conserved
6mer
1946-1957
0.001
0
7mer
1650-1671
0.001
Not Conserved
7mer
2926-2950
0.001
Not Conserved
6mer
2002-2013
0.000
Not Conserved
RP13-580B18.4
hsa-miR-28-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000624628
Biotype: lincRNA
Gene id: ENSG00000279072
Gene Name: RP13-580B18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10741-10761
0.006
1
7mer
115-141
0.005
Not Conserved
7mer
354-371
0.005
0
7mer
3485-3505
0.004
0
7mer
23456-23467
0.004
0
7mer
18772-18792
0.004
1
7mer
598-622
0.004
0
7mer
14570-14590
0.003
Not Conserved
7mer
8903-8923
0.003
Not Conserved
7mer
12723-12743
0.003
Not Conserved
7mer
5227-5247
0.003
Not Conserved
6mer
23774-23799
0.003
0
7mer
16312-16332
0.003
Not Conserved
7mer
18150-18170
0.003
Not Conserved
7mer
23583-23600
0.003
0
7mer
1230-1248
0.003
Not Conserved
7mer
792-809
0.003
0
7mer
18907-18925
0.003
0
7mer
20376-20393
0.002
0
7mer
23392-23409
0.002
0
6mer
20833-20848
0.002
0
7mer
21258-21275
0.002
0
7mer
23140-23157
0.002
0
7mer
19146-19163
0.002
0
7mer
22656-22679
0.002
0
7mer
21756-21773
0.002
0
7mer
4099-4121
0.002
0
7mer
23360-23384
0.002
0
7mer
19712-19738
0.002
0
7mer
23267-23282
0.002
0
7mer
23129-23148
0.002
0
7mer
16926-16948
0.001
Not Conserved
7mer
13337-13359
0.001
Not Conserved
7mer
7631-7653
0.001
Not Conserved
7mer
22338-22356
0.001
0
7mer
11355-11377
0.001
Not Conserved
7mer
1762-1784
0.001
Not Conserved
7mer
15184-15206
0.001
Not Conserved
7mer
15924-15941
0.001
0
7mer
4168-4179
0.001
0
7mer
5910-5921
0.001
0
7mer
3855-3872
0.001
0
7mer
22437-22454
0.001
Not Conserved
7mer
20155-20172
0.001
0
7mer
10353-10370
0.001
0
7mer
23520-23537
0.001
Not Conserved
7mer
2408-2430
0.001
Not Conserved
7mer
14184-14201
0.001
Not Conserved
7mer
23041-23065
0.001
0
7mer
9517-9539
0.001
Not Conserved
7mer
18524-18541
0.001
0
7mer
15871-15885
0.001
Not Conserved
7mer
6576-6590
0.001
Not Conserved
7mer
8462-8476
0.001
Not Conserved
7mer
4786-4800
0.001
Not Conserved
7mer
10300-10314
0.001
Not Conserved
8mer
21040-21054
0.001
Not Conserved
7mer
17762-17779
0.001
Not Conserved
7mer
12282-12296
0.001
Not Conserved
7mer
22877-22894
0.001
0
7mer
14120-14134
0.001
Not Conserved
7mer
6397-6422
0.001
0
7mer
17709-17723
0.001
Not Conserved
7mer
4839-4856
0.001
Not Conserved
7mer
11111-11128
0.001
Not Conserved
7mer
16682-16699
0.001
Not Conserved
7mer
2101-2118
0.001
Not Conserved
7mer
21952-21978
0.001
Not Conserved
7mer
14940-14957
0.001
Not Conserved
7mer
7387-7404
0.001
Not Conserved
7mer
5597-5614
0.001
Not Conserved
7mer
9273-9290
0.001
Not Conserved
7mer
13093-13110
0.001
Not Conserved
7mer
8515-8532
0.001
Not Conserved
7mer
12335-12352
0.001
Not Conserved
8mer
2289-2314
0.001
Not Conserved
7mer
7700-7711
0.001
Not Conserved
7mer
6629-6646
0.001
Not Conserved
7mer
15253-15264
0.001
Not Conserved
7mer
9586-9597
0.001
Not Conserved
7mer
13406-13417
0.001
Not Conserved
7mer
11424-11435
0.001
Not Conserved
7mer
16995-17006
0.001
Not Conserved
6mer
20027-20047
0.001
Not Conserved
7mer
3097-3114
0.001
Not Conserved
7mer
18650-18674
0.001
0
7mer
1834-1851
0.001
Not Conserved
7mer
3981-4005
0.001
0
7mer
22814-22831
0.001
Not Conserved
7mer
8283-8305
0.001
Not Conserved
7mer
22110-22127
0.001
Not Conserved
7mer
2477-2488
0.001
Not Conserved
7mer
17530-17555
0.001
Not Conserved
7mer
2868-2893
0.001
Not Conserved
7mer
10519-10536
0.001
0
7mer
13941-13966
0.001
Not Conserved
6mer
19490-19515
0.001
Not Conserved
7mer
10607-10626
0.001
0
7mer
12103-12128
0.001
Not Conserved
7mer
15692-15717
0.001
Not Conserved
6mer
5841-5863
0.001
Not Conserved
7mer
10121-10146
0.001
Not Conserved
7mer
6883-6902
0.001
Not Conserved
7mer
4607-4632
0.001
Not Conserved
7mer
21630-21647
0.001
Not Conserved
7mer
1644-1668
0.001
Not Conserved
7mer
12501-12518
0.001
Not Conserved
7mer
12589-12608
0.001
Not Conserved
7mer
20344-20361
0.001
0
7mer
7513-7537
0.001
Not Conserved
7mer
9399-9423
0.001
Not Conserved
7mer
16808-16832
0.001
Not Conserved
7mer
11237-11261
0.001
Not Conserved
7mer
5723-5747
0.001
Not Conserved
7mer
18016-18035
0.001
Not Conserved
7mer
15066-15090
0.001
Not Conserved
7mer
13219-13243
0.001
Not Conserved
7mer
16090-16107
0.001
Not Conserved
7mer
3263-3280
0.001
Not Conserved
7mer
2227-2251
0.000
Not Conserved
7mer
14438-14464
0.000
Not Conserved
7mer
5093-5112
0.000
Not Conserved
7mer
8681-8698
0.000
Not Conserved
7mer
14350-14367
0.000
Not Conserved
7mer
5005-5022
0.000
Not Conserved
7mer
16178-16197
0.000
Not Conserved
7mer
19458-19483
0.000
0
7mer
22238-22255
0.000
Not Conserved
7mer
1581-1605
0.000
Not Conserved
7mer
8769-8788
0.000
Not Conserved
7mer
6795-6812
0.000
Not Conserved
7mer
3351-3370
0.000
Not Conserved
6mer
3044-3058
0.000
Not Conserved
7mer
22426-22445
0.000
Not Conserved
7mer
14173-14192
0.000
Not Conserved
RP11-458F8.4
hsa-miR-28-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000610177
Biotype: lincRNA
Gene id: ENSG00000273142
Gene Name: RP11-458F8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2604-2622
0.022
1
8mer
2724-2749
0.013
1
7mer
3388-3405
0.011
1
7mer
2954-2970
0.010
1
7mer
2016-2032
0.008
1
7mer
491-508
0.008
1
7mer
3286-3310
0.007
0
7mer
2301-2320
0.006
1
7mer
146-165
0.006
1
7mer
2985-3002
0.006
1
7mer
3356-3373
0.005
0
7mer
854-871
0.004
1
7mer
595-608
0.004
0
7mer
756-771
0.004
1
7mer
713-739
0.003
0
8mer
1210-1228
0.003
0
7mer
2369-2383
0.003
1
7mer
758-782
0.003
1
6mer
3187-3210
0.003
0
6mer
2819-2843
0.002
0
7mer
1545-1560
0.002
1
7mer
2669-2684
0.002
0
6mer
2476-2501
0.002
1
7mer
1712-1726
0.002
1
6mer
950-971
0.001
0
6mer
2476-2493
0.001
0
7mer
1613-1630
0.001
1
7mer
1233-1259
0.001
0
6mer
1270-1291
0.001
1
6mer
1409-1426
0.001
0
XLOC_013553
hsa-miR-28-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028205
Biotype: transcript isomorph
Gene id: XLOC_013553
Gene Name: XLOC_013553
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6845-6862
0.014
1
7mer
6463-6484
0.011
1
8mer
6258-6274
0.010
0
8mer
6484-6504
0.007
0
7mer
1491-1509
0.006
1
6mer
6412-6431
0.005
1
6mer
5893-5916
0.004
1
6mer
5991-6014
0.004
1
7mer
2471-2495
0.004
1
6mer
5793-5816
0.004
1
6mer
5695-5718
0.004
1
7mer
1536-1562
0.003
1
6mer
6358-6379
0.003
0
6mer
2327-2342
0.003
1
6mer
2635-2656
0.003
1
6mer
5499-5522
0.003
1
6mer
5303-5326
0.002
1
6mer
5401-5424
0.002
1
6mer
5214-5228
0.002
1
6mer
6089-6112
0.002
0
6mer
2747-2762
0.002
1
6mer
4010-4025
0.002
0
7mer
1709-1724
0.002
0
6mer
5596-5619
0.002
0
7mer
3808-3834
0.002
Not Conserved
8mer
4275-4291
0.002
Not Conserved
6mer
1919-1935
0.001
0
7mer
4425-4449
0.001
0
7mer
3445-3460
0.001
0
6mer
4617-4640
0.001
0
6mer
4911-4934
0.001
0
6mer
3206-3221
0.001
0
6mer
4724-4738
0.001
0
8mer
4105-4130
0.001
Not Conserved
6mer
2079-2097
0.001
0
6mer
5107-5130
0.001
0
6mer
1596-1614
0.001
0
6mer
4519-4542
0.001
0
7mer
3301-3327
0.001
Not Conserved
7mer
2865-2887
0.001
Not Conserved
6mer
2379-2394
0.001
0
6mer
5008-5031
0.001
Not Conserved
6mer
4813-4836
0.001
Not Conserved
6mer
1973-1988
0.001
0
7mer
4179-4184
0.001
Not Conserved
6mer
3492-3513
0.001
Not Conserved
6mer
4328-4347
0.000
Not Conserved
6mer
4475-4493
0.000
Not Conserved
6mer
2846-2868
0.000
Not Conserved
RP11-809F4.3
hsa-miR-28-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562617
Biotype: lincRNA
Gene id: ENSG00000260217
Gene Name: RP11-809F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
425-444
0.063
1
8mer
1335-1359
0.049
1
6mer
601-627
0.007
0
AC006548.28
hsa-miR-28-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2440-2458
0.011
4
7mer
53798-53803
0.006
Not Conserved
8mer
50726-50732
0.005
Not Conserved
7mer
26144-26165
0.004
0
7mer
28525-28548
0.004
1
7mer
8654-8672
0.003
1
7mer
41299-41310
0.003
1
7mer
59047-59067
0.003
1
7mer
77618-77641
0.003
0
7mer
45933-45954
0.002
Not Conserved
6mer
31353-31374
0.002
1
7mer
77249-77272
0.002
0
6mer
26850-26872
0.002
1
6mer
13756-13778
0.002
3
7mer
62381-62406
0.002
1
6mer
31109-31131
0.002
0
6mer
1526-1547
0.002
1
6mer
18963-18977
0.002
1
6mer
4075-4099
0.002
1
6mer
75250-75271
0.002
0
6mer
48448-48465
0.002
Not Conserved
9mer
9770-9791
0.002
1
6mer
69843-69858
0.002
Not Conserved
6mer
45632-45655
0.002
Not Conserved
6mer
71000-71014
0.002
0
6mer
75956-75975
0.002
0
6mer
42099-42103
0.002
1
6mer
17438-17463
0.001
1
6mer
31808-31832
0.001
0
6mer
15130-15144
0.001
1
6mer
52272-52298
0.001
Not Conserved
6mer
4955-4967
0.001
1
6mer
23960-23984
0.001
1
6mer
57480-57496
0.001
0
6mer
76520-76540
0.001
0
6mer
14797-14809
0.001
1
6mer
38251-38276
0.001
1
6mer
65249-65262
0.001
1
7mer
14756-14771
0.001
2
6mer
14651-14675
0.001
0
6mer
78502-78521
0.001
0
6mer
7368-7386
0.001
0
7mer
66764-66788
0.001
Not Conserved
6mer
41536-41563
0.001
1
6mer
29397-29416
0.001
1
6mer
12859-12879
0.001
0
6mer
49829-49851
0.001
Not Conserved
6mer
39563-39582
0.001
Not Conserved
6mer
7932-7952
0.001
1
6mer
53752-53777
0.001
Not Conserved
6mer
7803-7826
0.001
1
7mer
7792-7814
0.001
1
6mer
58950-58973
0.001
1
8mer+wobble
11742-11760
0.001
Not Conserved
7mer
45527-45547
0.000
Not Conserved
XLOC_009652
hsa-miR-28-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021053
Biotype: transcript isomorph
Gene id: XLOC_009652
Gene Name: XLOC_009652
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
581-601
0.062
1
7mer
499-516
0.020
1
6mer
326-351
0.017
1
LINC00665
hsa-miR-28-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590657
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
327-351
0.029
1
7mer
89-109
0.028
1
6mer
105-126
0.024
1
6mer
1548-1570
0.009
1
7mer
1862-1882
0.007
0
FAM201A
hsa-miR-28-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000471864
Biotype: antisense
Gene id: ENSG00000204860
Gene Name: FAM201A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-676
0.062
1
6mer
642-659
0.013
1
8mer
235-252
0.008
0
6mer
496-512
0.005
0
KCNQ1OT1
hsa-miR-28-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5424-5436
0.010
1
8mer
91623-91648
0.009
0
8mer
63413-63434
0.008
1
8mer
30020-30045
0.007
0
8mer
20396-20410
0.004
0
6mer
64662-64677
0.003
4
7mer
61676-61698
0.003
1
7mer
74050-74060
0.003
0
7mer
68047-68062
0.003
0
6mer
91123-91138
0.003
1
8mer
64172-64193
0.002
1
6mer
76629-76633
0.002
1
6mer
52178-52191
0.002
1
6mer
9300-9313
0.002
0
6mer
79525-79546
0.002
3
6mer
55938-55962
0.002
1
6mer
44541-44545
0.002
1
6mer
27745-27762
0.002
0
6mer
80813-80835
0.002
1
6mer
54771-54788
0.002
1
6mer
2058-2081
0.002
1
6mer
42557-42572
0.002
1
6mer
82953-82977
0.001
0
6mer
46810-46828
0.001
0
6mer
79250-79265
0.001
2
6mer
85463-85485
0.001
1
6mer
85238-85263
0.001
3
6mer
74753-74772
0.001
0
6mer
62245-62266
0.001
Not Conserved
6mer
29130-29152
0.001
0
6mer
71474-71497
0.001
1
6mer
54995-55010
0.001
1
6mer
73923-73945
0.001
Not Conserved
6mer
9198-9219
0.001
Not Conserved
7mer
55875-55896
0.001
1
MIR4534
hsa-miR-28-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19534-19559
0.008
2
8mer
37260-37280
0.008
2
7mer
4522-4546
0.004
0
7mer
41137-41154
0.004
1
7mer
4234-4254
0.003
1
6mer
601-615
0.003
0
6mer
378-394
0.003
2
7mer
35248-35267
0.003
6
8mer
21036-21048
0.003
1
8mer
46363-46383
0.003
Not Conserved
7mer
44575-44589
0.002
1
7mer
10280-10299
0.002
1
7mer
36653-36674
0.002
1
8mer
36931-36947
0.002
0
6mer
13385-13412
0.002
3
7mer
16594-16620
0.002
0
6mer
19148-19172
0.002
3
7mer
50805-50825
0.002
1
6mer
13958-13984
0.002
0
9mer
51374-51387
0.002
2
6mer
24893-24920
0.002
3
6mer
33735-33759
0.001
1
6mer
38604-38627
0.001
1
6mer
38136-38157
0.001
1
6mer
31154-31175
0.001
0
6mer
35407-35425
0.001
7
6mer
9471-9494
0.001
1
7mer
46719-46739
0.001
0
6mer
26525-26542
0.001
1
6mer
43637-43654
0.001
0
6mer
53147-53170
0.001
0
6mer
28034-28053
0.001
1
8mer+wobble
41230-41247
0.001
1
6mer
48921-48941
0.001
0
6mer
24609-24625
0.001
1
6mer
20142-20158
0.001
2
6mer
14119-14138
0.001
1
6mer
30033-30047
0.001
1
8mer+mismatch
30165-30182
0.001
4
6mer
20269-20285
0.001
1
6mer
21116-21142
0.001
1
6mer
51338-51360
0.001
0
6mer
24517-24541
0.001
1
6mer
41448-41469
0.001
1
6mer
49006-49019
0.001
0
6mer
38142-38167
0.001
1
6mer
41466-41482
0.000
0
CTB-176F20.3
hsa-miR-28-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600671
Biotype: antisense
Gene id: ENSG00000267934
Gene Name: CTB-176F20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-43
0.011
0
6mer
124-139
0.011
0
6mer
189-213
0.010
0
6mer
92-107
0.009
0
6mer
100-122
0.009
0
6mer
60-84
0.009
0
6mer
342-356
0.008
0
6mer
257-283
0.008
0
6mer
388-406
0.006
0
6mer
1949-1974
0.004
0
LINC00665
hsa-miR-28-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585356
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
327-351
0.029
1
7mer
89-109
0.028
1
6mer
105-126
0.024
1
LINC00570
hsa-miR-28-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453100
Biotype: lincRNA
Gene id: ENSG00000224177
Gene Name: LINC00570
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-252
0.079
1
LINC00570
hsa-miR-28-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432665
Biotype: lincRNA
Gene id: ENSG00000224177
Gene Name: LINC00570
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
207-223
0.079
1
RP11-15B17.1
hsa-miR-28-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515026
Biotype: antisense
Gene id: ENSG00000245322
Gene Name: RP11-15B17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
652-667
0.044
1
7mer
433-454
0.018
4
8mer
143-165
0.011
4
6mer
172-196
0.005
1
RP11-266K4.13
hsa-miR-28-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
193-211
0.077
1
LOC100506639
hsa-miR-28-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_102752.1
Biotype: sense
Gene id: NR_102752.1 (gene)
Gene Name: LOC100506639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1214-1230
0.059
1
6mer
446-471
0.011
1
6mer
475-493
0.004
0
CTD-2538C1.3
hsa-miR-28-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587554
Biotype: lincRNA
Gene id: ENSG00000267567
Gene Name: CTD-2538C1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-106
0.074
1
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